SNP Profiles matching PA 137 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGTCTGGACCCAGCCGGGGAACC
1._RUQ_1081
__ACGTCT_ACCCAGCC__AA_
2._PA_137_[PER]
__ACGTCT_ACCCAGCC__AA_
3._PA_137_[PER]
__ACGTCT_AC_AGCC__AA_
4._PA_137_[PER]
__ACGTCT_AC_AGCC__AA_
5._PA_137_[PER]
__ACGTCT_AC-AGCC__AA_
6._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
7._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
8._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
9._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
10._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
11._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
12._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
13._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
14._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
15._GC-05-009-1-09
_CCACGTCTGGAACCAGCCGGGGAACC
16._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
17._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
18._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
19._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
20._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
21._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
22._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
23._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
24._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
25._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
26._RUQ_1081
__ACGTCT_ACCCAGCC__AA_
27._RUQ_36
__ACGTCT_ACCCAGCC__AA_
28._UF_667
__ACGTCT_AACCAGCC__AA_
 1516171819202122232425262728
_Input profile
AGACCTGGCGCCTTTTCCGGGGTTAAGG
1._RUQ_1081
AGACCTGGCGCC_TT_GG___GG
2._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
3._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
4._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
5._PA_137_[PER]
AGACCTGGCGCC_TT_-___GG
6._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
7._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
8._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
9._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
10._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
11._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
12._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
13._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
14._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
15._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
16._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
17._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
18._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
19._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
20._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
21._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
22._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
23._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
24._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
25._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
26._RUQ_1081
AGACCTGGCGCC_CT_GG___GG
27._RUQ_36
AGACCTGGCGCC_CT_GG___GG
28._UF_667
AGAACCGGCGCC_TT_GG___GG
 2930313233343536373839404142
_Input profile
CCCCAGTTCCGGGGTTTTCCCCCTCCGG
1._RUQ_1081
_CCAG_CC___TT__CTCCGG
2._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
3._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
4._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
5._PA_137_[PER]
CCCCAG_CC___TT__CTCCGG
6._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
7._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
8._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
9._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
10._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
11._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
12._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
13._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
14._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
15._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
16._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
17._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
18._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
19._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
20._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
21._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
22._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
23._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
24._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
25._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
26._RUQ_1081
_CCAG_CC___TT__CTCCGG
27._RUQ_36
_CCAG_CC___TT__CTCCGG
28._UF_667
_CCAG_CC___TT__CTCGGG

Input profile: PA_137_[PER] RUQ_1081

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_137_[PER] RUQ_1081

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

3._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

6._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

9._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

11._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

17._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

20._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

21._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

24._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

25._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

26._PA_137_[PER] RUQ_1081

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._PA_137_[PER] RUQ_36

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._UF_667

91.7 %
24 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484